PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14163.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 407aa    MW: 47232.4 Da    PI: 6.027
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14163.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-1543133187
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                       k+Y +YA+  GF +r+++ +++ ++g i + ++vC+k gk++  k++       + err++++ r++Ck  l++k+  dg+++v ++   Hn 
  Bradi5g14163.2.p  43 KYYLNYAQWHGFGIRIDYARQT-NDGVISRGRLVCTKAGKDNMVKEDtqkpksVVPERRRNTTVRIDCKSLLRLKRV-DGNYKVVEFIDTHNL 133
                       69***************98887.9999**************999888888888889999****************99.**************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1343134IPR004330FAR1 DNA binding domain
PfamPF105518.1E-15240308IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGDEIMYGQD EEEMCDDGND DDISAPKAPS CDMTFESSKA AQKYYLNYAQ WHGFGIRIDY  60
ARQTNDGVIS RGRLVCTKAG KDNMVKEDTQ KPKSVVPERR RNTTVRIDCK SLLRLKRVDG  120
NYKVVEFIDT HNLPIIKKFN LVKYMRSHRD ISPEEREFLR ILHRANVTTS RMMQIMAGIH  180
KSPHNVTYTR KDVANFRESV RREHNITDIE DTLAYFQELK SEDGDFFFSI QLDEESRVMN  240
LFWMPCAPFI GINNHGMSVQ FGCGFLRNED TMSFAWLFNT FLEAMDGLAP INIITDQDFA  300
MRAGIESAHE KLGAFMGAHE DLHLEMNDCL NNSYNPGEFE HKWTSMIARY GVQDHVDLNA  360
LWEKRASWIP AYFMQNFFPF LQSTQHTEGF NAVLKRYVNP SSLLYNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231561.11e-165PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3IB180.0A0A0Q3IB18_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI5G14050.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-56FAR1-related sequence 5